🔬 Explore Sid's Data
Explore single-cell transcriptomics and tissue imaging data from Sid Sijbrandij's osteosarcoma tumor samples — openly shared to advance cancer research.
Treatment Timeline
Interactive visualization of treatment history, MRD measurements, procedures, and imaging from November 2022 to present.
scRNA-seq
Single-cell RNA-seq from:
- Tumor biopsies at time points T1, T2, and T3
- CD3+ PBMC at eight time points
Gene Set Enrichment Analysis
GSEA of the single-cell RNA-seq data from tumor. Limma and DESeq2 results from two levels of cell clusters from tumor single-cell RNA-seq from T1, T2, and T3.
Copy Number Variation
Interactive genome browser showing ASCAT copy number analysis from whole genome sequencing at two timepoints (T1: June 2024, T2: January 2025).
Cell Lines
Information about osteosarcoma cell lines including HOS, U-2 OS, and CAL-72 with genomic profiles and curated citations.
Data Files
25TB of data: bulk WGS, WES, RNA-seq, scRNA-seq, long-read sequencing (ONT), spatial transcriptomics, imaging (H&E, IHC), and HLA typing.
Contact Us
Please contact us with any questions or comments.